STRINGSTRING
xpnpep1 protein (Ciona intestinalis) - STRING interaction network
"xpnpep1" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xpnpep1Uncharacterized protein (663 aa)    
Predicted Functional Partners:
ENSCING00000002850
Uncharacterized protein (2241 aa)
   
   
  0.776
ENSCING00000018274
Uncharacterized protein (89 aa)
     
 
  0.633
ENSCING00000007544
Uncharacterized protein (1596 aa)
   
   
  0.602
ci-htf-1
Transcription factor ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1297 aa)
   
   
  0.599
ENSCING00000019352
Uncharacterized protein (81 aa)
     
 
  0.590
anpep
Uncharacterized protein (915 aa)
   
 
  0.565
ENSCING00000007366
Uncharacterized protein (219 aa)
   
 
  0.565
ENSCING00000006862
Uncharacterized protein (920 aa)
   
 
  0.565
ENSCING00000004939
Uncharacterized protein (942 aa)
   
 
  0.565
ENSCING00000018234
Uncharacterized protein (381 aa)
   
 
  0.565
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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