STRINGSTRING
gcnf protein (Ciona intestinalis) - STRING interaction network
"gcnf" - Nuclear receptor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcnfNuclear receptor (694 aa)    
Predicted Functional Partners:
Cin.25686
Uncharacterized protein (373 aa)
       
  0.873
ENSCING00000018708
Uncharacterized protein (1528 aa)
       
  0.651
ENSCING00000009221
Uncharacterized protein (572 aa)
     
  0.634
ENSCING00000021447
Uncharacterized protein (160 aa)
     
  0.621
ENSCING00000018867
Uncharacterized protein (227 aa)
     
  0.621
ftzf
Nuclear receptor (504 aa)
       
 
0.591
ENSCING00000003432
Uncharacterized protein (1219 aa)
       
  0.538
ENSCING00000025034
Uncharacterized protein (355 aa)
       
 
  0.519
ENSCING00000022137
Zinc finger protein Ci-ZF(C2H2)-42 (597 aa)
     
  0.504
ENSCING00000023054
Uncharacterized protein (181 aa)
       
  0.504
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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