STRINGSTRING
nk4 protein (Ciona intestinalis) - STRING interaction network
"nk4" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nk4Transcription factor protein (623 aa)    
Predicted Functional Partners:
LOC778715
Transcription factor protein (1039 aa)
     
  0.674
gata-b
Transcription factor protein; Uncharacterized protein (553 aa)
     
  0.657
fkh
Transcription factor protein (633 aa)
     
  0.598
mef2
Transcription factor protein (439 aa)
       
  0.555
foxa-b
Uncharacterized protein (235 aa)
     
  0.551
gataa
GATAa protein (641 aa)
     
  0.549
zicl
Zic-like protein Ci-ZicL (390 aa)
       
 
  0.511
hand
Transcription factor protein (378 aa)
       
  0.504
notrlc
Transcription factor protein (297 aa)
       
  0.487
foxE
foxE protein (721 aa)
     
  0.477
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (9%) [HD]