STRINGSTRING
frem1 protein (Ciona intestinalis) - STRING interaction network
"frem1" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frem1Uncharacterized protein (2177 aa)    
Predicted Functional Partners:
ci-tlr2
Toll-like receptor 2 (947 aa)
     
  0.640
ENSCING00000018199
Uncharacterized protein (837 aa)
     
  0.634
ENSCING00000018834
Uncharacterized protein (182 aa)
     
  0.624
ENSCING00000019897
Uncharacterized protein (290 aa)
     
  0.624
ENSCING00000023366
Uncharacterized protein (514 aa)
     
  0.624
ENSCING00000023562
Uncharacterized protein (495 aa)
     
  0.624
ENSCING00000014653
Uncharacterized protein (370 aa)
     
  0.624
ENSCING00000019098
Uncharacterized protein (649 aa)
     
  0.624
ENSCING00000021381
Uncharacterized protein (305 aa)
     
  0.624
ENSCING00000023789
Uncharacterized protein (101 aa)
     
  0.624
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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