STRINGSTRING
nfya protein (Ciona intestinalis) - STRING interaction network
"nfya" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfyaUncharacterized protein (383 aa)    
Predicted Functional Partners:
nfyb
Transcription factor protein (184 aa)
     
  0.993
ENSCING00000007727
Uncharacterized protein (263 aa)
     
  0.989
ENSCING00000022359
Histone H3 (136 aa)
       
  0.814
ENSCING00000013118
Uncharacterized protein (147 aa)
       
  0.814
ENSCING00000002753
Histone H3 (136 aa)
       
  0.814
ENSCING00000019150
Zinc finger protein ZF(C2H2)-78 (398 aa)
     
  0.780
ENSCING00000005659
Uncharacterized protein (550 aa)
       
      0.733
ENSCING00000008073
Zinc finger protein 36 (322 aa)
     
  0.698
ENSCING00000004861
Zinc finger protein (540 aa)
     
  0.681
ENSCING00000006765
Zinc finger protein isoform 1 (520 aa)
     
  0.676
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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