STRINGSTRING
lims1 protein (Ciona intestinalis) - STRING interaction network
"lims1" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lims1Uncharacterized protein (326 aa)    
Predicted Functional Partners:
ENSCING00000001615
Uncharacterized protein (447 aa)
     
  0.988
ENSCING00000007978
Uncharacterized protein (276 aa)
     
  0.968
ENSCING00000022233
Uncharacterized protein (107 aa)
     
0.907
ENSCING00000001795
Uncharacterized protein (333 aa)
     
0.868
ENSCING00000004997
Uncharacterized protein (359 aa)
     
  0.804
ENSCING00000007947
Uncharacterized protein (428 aa)
       
  0.763
ENSCING00000024519
Uncharacterized protein (82 aa)
     
  0.674
ENSCING00000009362
Integrin beta (827 aa)
     
 
  0.628
ENSCING00000006316
Integrin beta (828 aa)
     
 
  0.628
ENSCING00000002989
Integrin beta (710 aa)
     
 
  0.628
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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