STRINGSTRING
pf16 protein (Ciona intestinalis) - STRING interaction network
"pf16" - Pf16 protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pf16Pf16 protein (425 aa)    
Predicted Functional Partners:
ENSCING00000004639
Uncharacterized protein (883 aa)
     
  0.965
zf(rbz)-2
Zinc finger protein (1304 aa)
       
  0.918
ipo5
Uncharacterized protein (1110 aa)
     
 
  0.908
ENSCING00000021983
Uncharacterized protein (1422 aa)
     
  0.865
ENSCING00000001918
Uncharacterized protein (211 aa)
     
  0.865
ENSCING00000013303
Uncharacterized protein (120 aa)
     
  0.865
ENSCING00000002277
Uncharacterized protein (972 aa)
     
 
  0.853
ncbp1
Uncharacterized protein (795 aa)
     
 
  0.790
ENSCING00000008639
Uncharacterized protein (1021 aa)
     
 
  0.786
Cin.19146
Uncharacterized protein ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (161 aa)
     
  0.785
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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