STRINGSTRING
tcfl1 protein (Ciona intestinalis) - STRING interaction network
"tcfl1" - TCFL1 protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcfl1TCFL1 protein (333 aa)    
Predicted Functional Partners:
ENSCING00000005798
Histone H2A (128 aa)
     
  0.985
ENSCING00000004824
Uncharacterized protein (456 aa)
     
  0.973
ENSCING00000003117
Uncharacterized protein (404 aa)
     
  0.970
ENSCING00000001161
Uncharacterized protein ; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (121 aa)
       
 
  0.962
ENSCING00000004658
Uncharacterized protein (467 aa)
     
  0.962
ENSCING00000021691
Uncharacterized protein (167 aa)
       
  0.954
ENSCING00000004687
Uncharacterized protein (1214 aa)
       
  0.945
ENSCING00000014238
Uncharacterized protein (241 aa)
     
  0.925
ENSCING00000010516
Uncharacterized protein (228 aa)
     
  0.922
ENSCING00000007170
Uncharacterized protein (960 aa)
     
  0.920
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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