STRINGSTRING
ci-rsp9 protein (Ciona intestinalis) - STRING interaction network
"ci-rsp9" - Uncharacterized protein LOC100179789 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ci-rsp9Uncharacterized protein LOC100179789 (276 aa)    
Predicted Functional Partners:
ci-rsp4/6
Uncharacterized protein LOC100180393 (527 aa)
     
   
  0.603
ccdc40
Uncharacterized protein (864 aa)
     
   
  0.580
ENSCING00000004961
Uncharacterized protein (214 aa)
           
  0.562
ENSCING00000010830
Uncharacterized protein (204 aa)
       
      0.561
ENSCING00000004820
Uncharacterized protein ; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (1051 aa)
       
      0.561
ENSCING00000003620
Uncharacterized protein ; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (700 aa)
       
      0.561
eif3e
Eukaryotic translation initiation factor 3 subunit E ; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (443 aa)
       
      0.561
ccdc39
Uncharacterized protein (238 aa)
     
   
  0.543
ENSCING00000016044
Uncharacterized protein (628 aa)
     
   
  0.532
ENSCING00000022125
Uncharacterized protein (500 aa)
     
   
  0.493
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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