STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178344ATP synthase subunit f, mitochondrial. (116 aa)    
Predicted Functional Partners:
LOC100176278
Uncharacterized protein.
     
  0.650
LOC100179838
ATP synthase subunit O, mitochondrial.
     
  0.540
ciatpsyna
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
     
  0.540
F6RR11_CIOIN
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
     
  0.540
LOC100177133
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
     
  0.540
LOC101243330
ATP synthase subunit delta, mitochondrial-like.
     
  0.540
F6PM15_CIOIN
ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]
     
  0.540
F6RE18_CIOIN
ATP synthase subunit gamma.
     
  0.540
LOC100178780
ATP synthase-coupling factor 6, mitochondrial-like.
     
  0.540
F6ZK97_CIOIN
Uncharacterized protein.
     
  0.540
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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