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gata-b protein (Ciona intestinalis) - STRING interaction network
"gata-b" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gata-bTranscription factor protein; Uncharacterized protein (553 aa)    
Predicted Functional Partners:
ENSCING00000008254
Zinc finger protein ZF(C2H2)-129 (687 aa)
       
  0.844
ENSCING00000009221
Uncharacterized protein (572 aa)
     
  0.714
zicl
Zic-like protein Ci-ZicL (390 aa)
       
  0.707
klf2
Zinc finger protein (610 aa)
     
  0.674
ENSCING00000018501
Zinc finger protein LOC723797 (1251 aa)
     
  0.673
ENSCING00000003820
Zinc finger protein (912 aa)
     
  0.673
ENSCING00000017391
Zinc finger protein (587 aa)
     
  0.673
ENSCING00000014942
Zinc finger protein ZF(C2H2)-80 (698 aa)
     
  0.673
ENSCING00000011342
Uncharacterized protein (189 aa)
     
  0.673
ENSCING00000023054
Uncharacterized protein (181 aa)
       
  0.672
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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