STRINGSTRING
ENSCING00000016042 protein (Ciona intestinalis) - STRING interaction network
"ENSCING00000016042" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCING00000016042Uncharacterized protein (167 aa)    
Predicted Functional Partners:
ENSCING00000024100
Uncharacterized protein (125 aa)
     
  0.999
ENSCING00000023749
Uncharacterized protein (90 aa)
     
  0.998
ENSCING00000020031
Uncharacterized protein (118 aa)
     
  0.998
Cin.28339
Uncharacterized protein (115 aa)
     
  0.991
ENSCING00000019152
Uncharacterized protein (82 aa)
     
  0.991
Cin.24608
Uncharacterized protein (95 aa)
     
  0.991
ENSCING00000024877
Uncharacterized protein (96 aa)
     
  0.990
ENSCING00000022134
Uncharacterized protein (99 aa)
     
  0.990
ENSCING00000007519
Uncharacterized protein (127 aa)
     
  0.990
U1C
U1 small nuclear ribonucleoprotein C ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (122 aa)
     
  0.989
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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