STRINGSTRING
mef2 protein (Ciona intestinalis) - STRING interaction network
"mef2" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mef2Transcription factor protein (439 aa)    
Predicted Functional Partners:
ENSCING00000023859
Uncharacterized protein (325 aa)
       
  0.869
myod
MyoD-family protein j (590 aa)
       
  0.852
erk1/2
Mitogen-activated protein kinase (350 aa)
     
  0.815
erk5
Mitogen-activated protein kinase (820 aa)
     
  0.800
LOC778715
Transcription factor protein (1039 aa)
     
  0.768
ENSCING00000001478
Uncharacterized protein (364 aa)
     
  0.735
erk3/4
Mitogen-activated protein kinase (906 aa)
     
  0.735
gataa
GATAa protein (641 aa)
     
  0.706
ENSCING00000008243
Uncharacterized protein ; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (1009 aa)
       
  0.698
e12/e47
Transcription factor protein (641 aa)
     
  0.686
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (13%) [HD]