STRINGSTRING
meta3 protein (Ciona intestinalis) - STRING interaction network
"meta3" - Ci-META3 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
meta3Ci-META3 (319 aa)    
Predicted Functional Partners:
ENSCING00000001685
Uncharacterized protein (162 aa)
     
  0.881
ENSCING00000002160
Uncharacterized protein (114 aa)
       
    0.817
ENSCING00000006501
Uncharacterized protein (778 aa)
     
  0.688
zf(cxxc)-1
Zinc finger protein (818 aa)
     
 
  0.677
ENSCING00000001770
Zinc finger protein (694 aa)
     
  0.654
ENSCING00000010722
Uncharacterized protein (336 aa)
     
  0.648
ENSCING00000000272
Uncharacterized protein (2337 aa)
         
  0.647
betaTrCP
Beta-transducin repeat-containing homologue protein (621 aa)
         
  0.642
ENSCING00000004251
Uncharacterized protein (583 aa)
     
 
  0.642
herc4
Uncharacterized protein (1029 aa)
         
  0.632
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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