STRINGSTRING
rpe65 protein (Ciona intestinalis) - STRING interaction network
"rpe65" - RPE65 homolog in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpe65RPE65 homolog (356 aa)    
Predicted Functional Partners:
ENSCING00000019573
Uncharacterized protein (228 aa)
     
   
  0.547
ENSCING00000023909
Uncharacterized protein (281 aa)
     
   
  0.547
ENSCING00000022438
Uncharacterized protein (69 aa)
   
          0.490
ENSCING00000008248
Uncharacterized protein (549 aa)
     
   
  0.436
ENSCING00000006216
Uncharacterized protein (547 aa)
     
   
  0.424
ci-prd-a
Transcription factor protein; Uncharacterized protein (121 aa)
           
  0.424
ENSCING00000004280
Uncharacterized protein (296 aa)
           
  0.416
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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