STRINGSTRING
tgm2 protein (Ciona intestinalis) - STRING interaction network
"tgm2" - Transglutiminase in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tgm2Transglutiminase (766 aa)    
Predicted Functional Partners:
ENSCING00000018153
Uncharacterized protein (2970 aa)
         
  0.627
ENSCING00000013191
Uncharacterized protein (408 aa)
       
  0.616
ENSCING00000007413
Uncharacterized protein (409 aa)
       
  0.616
LOC619278
Thrombospondin A precursor (1166 aa)
       
  0.616
ENSCING00000007248
Uncharacterized protein (255 aa)
       
    0.612
LOC445590
SPARC precursor (366 aa)
       
    0.610
ENSCING00000024475
Uncharacterized protein (356 aa)
       
    0.605
ENSCING00000002180
Uncharacterized protein (575 aa)
       
    0.605
actn2
Uncharacterized protein (927 aa)
         
  0.605
tgfbeta2
Transforming growth factor beta superfamily signaling ligand precursor (435 aa)
         
  0.601
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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