STRINGSTRING
nfrkb protein (Ciona intestinalis) - STRING interaction network
"nfrkb" - Nuclear factor related to kappa-B-binding protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfrkbNuclear factor related to kappa-B-binding protein (310 aa)    
Predicted Functional Partners:
ENSCING00000000924
Uncharacterized protein (328 aa)
       
  0.944
ENSCING00000020085
Uncharacterized protein (237 aa)
       
  0.819
ENSCING00000008868
Uncharacterized protein (164 aa)
       
  0.741
ENSCING00000004824
Uncharacterized protein (456 aa)
       
    0.738
ENSCING00000004687
Uncharacterized protein (1214 aa)
     
  0.735
ENSCING00000004658
Uncharacterized protein (467 aa)
     
    0.553
ENSCING00000020660
Uncharacterized protein (427 aa)
     
  0.522
ddb1
Uncharacterized protein (1145 aa)
     
 
    0.512
ENSCING00000019272
Uncharacterized protein (362 aa)
     
 
    0.509
ENSCING00000013290
Uncharacterized protein (221 aa)
     
 
    0.509
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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