STRINGSTRING
LOC445590 protein (Ciona intestinalis) - STRING interaction network
"LOC445590" - SPARC precursor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC445590SPARC precursor (366 aa)    
Predicted Functional Partners:
ENSCING00000008562
Transforming growth factor beta superfamily signaling ligand precursor (385 aa)
       
  0.647
tgfbeta2
Transforming growth factor beta superfamily signaling ligand precursor (435 aa)
       
  0.645
ENSCING00000022078
Uncharacterized protein (1201 aa)
     
 
  0.634
ENSCING00000018153
Uncharacterized protein (2970 aa)
       
    0.620
tgm2
Transglutiminase (766 aa)
       
    0.610
ENSCING00000004905
Uncharacterized protein (711 aa)
       
    0.610
ENSCING00000000065
Uncharacterized protein (703 aa)
       
    0.610
ENSCING00000004765
Uncharacterized protein (222 aa)
     
 
  0.597
ENSCING00000007248
Uncharacterized protein (255 aa)
         
  0.593
cipc2
Similar to putative prohormone convertase 2 (660 aa)
           
  0.579
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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