STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100183780Signal peptidase complex catalytic subunit SEC11. (179 aa)    
Predicted Functional Partners:
LOC100178515
Probable signal peptidase complex subunit 2.
   
 0.972
LOC100184661
Signal peptidase complex subunit 3.
   
 0.966
H2XNI5_CIOIN
Ig-like domain-containing protein.
   
 
  0.884
F6UET6_CIOIN
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
     
 0.710
F6ZLY9_CIOIN
Uncharacterized protein.
    
 0.665
H2XSU3_CIOIN
Uncharacterized protein.
    
 0.626
F6WK69_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.551
L7N0S6_CIOIN
Signal peptidase complex catalytic subunit SEC11.
  
  
 
0.544
ci-zf(ring)-3
Uncharacterized protein.
    
 0.540
LOC100183442
GATOR complex protein NPRL2-like.
    
 0.533
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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