STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thBH4_AAA_HYDROXYL_2 domain-containing protein. (429 aa)    
Predicted Functional Partners:
H2XYU8_CIOIN
Uncharacterized protein.
  
 0.989
hdcl
Uncharacterized protein.
   
 0.948
LOC100182530
aromatic-L-amino-acid decarboxylase-like.
   
 0.948
LOC100179315
Aspartate aminotransferase.
  
 
 0.946
LOC100184965
Aspartate aminotransferase.
  
 
 0.942
LOC100175137
Dihydropteridine reductase isoform X2.
    
 0.934
F6QRU4_CIOIN
Uncharacterized protein.
   
 
 0.925
LOC100183684
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
   
 
 0.924
LOC100049066
BH4_AAA_HYDROXYL_2 domain-containing protein.
  
 
0.912
LOC100183818
EGF_CA domain-containing protein.
     
 0.909
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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