STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ephrina-bEphrin precursor; Belongs to the ephrin family. (265 aa)    
Predicted Functional Partners:
eph3
Uncharacterized protein.
   
 0.725
Eph-like
Uncharacterized protein.
   
 0.656
Ephrina-c
Ephrin RBD domain-containing protein; Belongs to the ephrin family.
  
  
0.526
Ephd
Uncharacterized protein.
   
 0.523
F6QR95_CIOIN
Uncharacterized protein.
   
 0.523
Ephe
Uncharacterized protein.
   
 0.523
F6VYU2_CIOIN
Receptor protein-tyrosine kinase.
   
 0.498
ephrinb
Ephrin precursor; Belongs to the ephrin family.
  
  
0.479
Fgf9/16/20
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.478
F6Z8I7_CIOIN
Uncharacterized protein.
    
 0.464
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.