STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100185771Tropomyosin, smooth muscle/fibroblast CTM1; The function of tropomyosin in smooth muscle and non-muscle cells is not clear; Belongs to the tropomyosin family. (284 aa)    
Predicted Functional Partners:
F6VRV5_CIOIN
Uncharacterized protein.
   
 0.904
LOC100179388
Uncharacterized protein.
   
 0.867
LOC100179358
Glutamine amidotransferase-like class 1 domain-containing protein 1.
   
 0.770
LOC113474176
kxDL motif-containing protein 1-like.
   
   0.726
F6R9V2_CIOIN
EF-hand domain-containing protein.
   
 0.711
F6R9M9_CIOIN
EF-hand domain-containing protein.
   
 0.711
F6R9G4_CIOIN
EF-hand domain-containing protein.
   
 0.711
LOC100187178
Myosin regulatory light chain 12A.
   
 0.695
H2XNV5_CIOIN
Uncharacterized protein.
   
 0.691
LOC100185663
Vinculin.
   
 0.669
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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