C3XRY6_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3XRY6_BRAFL

Katanin_con80 domain-containing protein. (344 aa)

Predicted Functional Partners:

C3Z9X8_BRAFL

0.702

C3YH69_BRAFL

0.664

KATNA1

0.586

KATNB1

0.551

C3Y8L0_BRAFL

0.538

C3ZCW1_BRAFL

0.474

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRY6_BRAFL	C3Y8L0_BRAFL	C3XRY6	C3Y8L0	Katanin_con80 domain-containing protein.	Uncharacterized protein.	0.538
C3XRY6_BRAFL	C3YH69_BRAFL	C3XRY6	C3YH69	Katanin_con80 domain-containing protein.	Uncharacterized protein.	0.664
C3XRY6_BRAFL	C3Z9X8_BRAFL	C3XRY6	C3Z9X8	Katanin_con80 domain-containing protein.	AAA domain-containing protein.	0.702
C3XRY6_BRAFL	C3ZCW1_BRAFL	C3XRY6	C3ZCW1	Katanin_con80 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.474
C3XRY6_BRAFL	KATNA1	C3XRY6	C3ZW94	Katanin_con80 domain-containing protein.	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	0.586
C3XRY6_BRAFL	KATNB1	C3XRY6	C3YLC5	Katanin_con80 domain-containing protein.	Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	0.551
C3Y8L0_BRAFL	C3XRY6_BRAFL	C3Y8L0	C3XRY6	Uncharacterized protein.	Katanin_con80 domain-containing protein.	0.538
C3Y8L0_BRAFL	C3YH69_BRAFL	C3Y8L0	C3YH69	Uncharacterized protein.	Uncharacterized protein.	0.535
C3YH69_BRAFL	C3XRY6_BRAFL	C3YH69	C3XRY6	Uncharacterized protein.	Katanin_con80 domain-containing protein.	0.664
C3YH69_BRAFL	C3Y8L0_BRAFL	C3YH69	C3Y8L0	Uncharacterized protein.	Uncharacterized protein.	0.535
C3Z9X8_BRAFL	C3XRY6_BRAFL	C3Z9X8	C3XRY6	AAA domain-containing protein.	Katanin_con80 domain-containing protein.	0.702
C3Z9X8_BRAFL	KATNB1	C3Z9X8	C3YLC5	AAA domain-containing protein.	Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	0.962
C3ZCW1_BRAFL	C3XRY6_BRAFL	C3ZCW1	C3XRY6	WD_REPEATS_REGION domain-containing protein.	Katanin_con80 domain-containing protein.	0.474
KATNA1	C3XRY6_BRAFL	C3ZW94	C3XRY6	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	Katanin_con80 domain-containing protein.	0.586
KATNA1	KATNB1	C3ZW94	C3YLC5	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	0.971
KATNB1	C3XRY6_BRAFL	C3YLC5	C3XRY6	Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	Katanin_con80 domain-containing protein.	0.551
KATNB1	C3Z9X8_BRAFL	C3YLC5	C3Z9X8	Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	AAA domain-containing protein.	0.962
KATNB1	KATNA1	C3YLC5	C3ZW94	Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	Katanin p60 ATPase-containing subunit A1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	0.971