STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3XTB1_BRAFLAA_TRNA_LIGASE_II_ALA domain-containing protein. (407 aa)    
Predicted Functional Partners:
C3XZ88_BRAFL
Uncharacterized protein.
     
 0.750
C3ZM79_BRAFL
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.728
C3YTK3_BRAFL
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.583
C3Y8L9_BRAFL
Lysine--tRNA ligase.
   
  
 0.553
C3Z9M2_BRAFL
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
  
 0.540
C3Y211_BRAFL
Uncharacterized protein.
      
 0.536
C3YJV4_BRAFL
tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.478
C3XQZ0_BRAFL
Uncharacterized protein.
   
  
 0.426
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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