STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3XY49_BRAFLSH3 domain-containing protein. (65 aa)    
Predicted Functional Partners:
C3ZT96_BRAFL
Uncharacterized protein.
   
 0.856
C3Y0Y7_BRAFL
Cbl-PTB domain-containing protein.
    
 0.778
C3XWJ7_BRAFL
PH domain-containing protein.
    
 0.729
C3ZXU0_BRAFL
Uncharacterized protein.
    
 0.672
C3ZLK0_BRAFL
Uncharacterized protein.
     
0.658
C3ZLK1_BRAFL
Uncharacterized protein.
     
 0.658
C3Y4J7_BRAFL
Uncharacterized protein.
   
 0.642
C3YNN7_BRAFL
Uncharacterized protein.
   
 0.642
C3ZLD5_BRAFL
Uncharacterized protein.
   
 0.628
C3ZWW7_BRAFL
COR domain-containing protein.
   
 0.628
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.