C3XZW4_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3XZW4_BRAFL

Ig-like domain-containing protein. (987 aa)

Predicted Functional Partners:

C3XZT9_BRAFL

0.524

C3Y2K5_BRAFL

0.513

C3ZTF9_BRAFL

0.513

C3YZC2_BRAFL

0.507

C3XRA3_BRAFL

0.489

C3XS32_BRAFL

0.489

C3XX79_BRAFL

0.489

C3Y9C6_BRAFL

0.489

C3Z4Y1_BRAFL

0.489

C3Y0V0_BRAFL

0.455

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRA3_BRAFL	C3XS32_BRAFL	C3XRA3	C3XS32	HATPase_c domain-containing protein.	HATPase_c domain-containing protein.	0.900
C3XRA3_BRAFL	C3XZT9_BRAFL	C3XRA3	C3XZT9	HATPase_c domain-containing protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.639
C3XRA3_BRAFL	C3XZW4_BRAFL	C3XRA3	C3XZW4	HATPase_c domain-containing protein.	Ig-like domain-containing protein.	0.489
C3XRA3_BRAFL	C3Y0V0_BRAFL	C3XRA3	C3Y0V0	HATPase_c domain-containing protein.	Uncharacterized protein.	0.623
C3XRA3_BRAFL	C3Y2K5_BRAFL	C3XRA3	C3Y2K5	HATPase_c domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.608
C3XRA3_BRAFL	C3YZC2_BRAFL	C3XRA3	C3YZC2	HATPase_c domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.664
C3XRA3_BRAFL	C3ZTF9_BRAFL	C3XRA3	C3ZTF9	HATPase_c domain-containing protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.742
C3XS32_BRAFL	C3XRA3_BRAFL	C3XS32	C3XRA3	HATPase_c domain-containing protein.	HATPase_c domain-containing protein.	0.900
C3XS32_BRAFL	C3XZT9_BRAFL	C3XS32	C3XZT9	HATPase_c domain-containing protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.639
C3XS32_BRAFL	C3XZW4_BRAFL	C3XS32	C3XZW4	HATPase_c domain-containing protein.	Ig-like domain-containing protein.	0.489
C3XS32_BRAFL	C3Y0V0_BRAFL	C3XS32	C3Y0V0	HATPase_c domain-containing protein.	Uncharacterized protein.	0.623
C3XS32_BRAFL	C3Y2K5_BRAFL	C3XS32	C3Y2K5	HATPase_c domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.608
C3XS32_BRAFL	C3YZC2_BRAFL	C3XS32	C3YZC2	HATPase_c domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.664
C3XS32_BRAFL	C3ZTF9_BRAFL	C3XS32	C3ZTF9	HATPase_c domain-containing protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.742
C3XX79_BRAFL	C3XZT9_BRAFL	C3XX79	C3XZT9	Uncharacterized protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.639
C3XX79_BRAFL	C3XZW4_BRAFL	C3XX79	C3XZW4	Uncharacterized protein.	Ig-like domain-containing protein.	0.489
C3XX79_BRAFL	C3Y0V0_BRAFL	C3XX79	C3Y0V0	Uncharacterized protein.	Uncharacterized protein.	0.623
C3XX79_BRAFL	C3Y2K5_BRAFL	C3XX79	C3Y2K5	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.608
C3XX79_BRAFL	C3YZC2_BRAFL	C3XX79	C3YZC2	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.664
C3XX79_BRAFL	C3ZTF9_BRAFL	C3XX79	C3ZTF9	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.648