STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Y174_BRAFLOrn_Arg_deC_N domain-containing protein. (151 aa)    
Predicted Functional Partners:
C3Y173_BRAFL
Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.941
C3ZX52_BRAFL
Uncharacterized protein.
    
 0.848
C3YJ03_BRAFL
Uncharacterized protein.
     
 0.748
C3Z4T8_BRAFL
Arginase.
  
 
 0.688
C3ZD81_BRAFL
Uncharacterized protein; Belongs to the arginase family.
  
 
 0.687
C3ZBR3_BRAFL
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
  
 
 0.638
C3YTK3_BRAFL
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.608
C3ZM79_BRAFL
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.601
C3YXK9_BRAFL
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
  
  
 0.573
C3ZBQ0_BRAFL
Uncharacterized protein.
      
 0.571
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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