STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Y320_BRAFLUncharacterized protein. (512 aa)    
Predicted Functional Partners:
C3Y7Q0_BRAFL
Uncharacterized protein.
    
 0.894
C3YXK5_BRAFL
UvrD_C_2 domain-containing protein.
    
 0.894
C3YE11_BRAFL
Uncharacterized protein.
    
  0.845
C3YQT2_BRAFL
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
    
  0.845
C3Y721_BRAFL
Eukaryotic translation initiation factor 5A.
     
 0.778
LIAS_BRAFL
Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives; Belongs to the radical SAM superfamily. Lipoyl synthase family.
      
 0.577
C3Y8L9_BRAFL
Lysine--tRNA ligase.
      
 0.513
C3ZM79_BRAFL
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.480
C3Y7Y4_BRAFL
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.472
C3Z4B7_BRAFL
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.472
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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