STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Y5U9_BRAFLDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1104 aa)    
Predicted Functional Partners:
C3XPX8_BRAFL
RPOL4c domain-containing protein.
    
 0.999
C3XRA2_BRAFL
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.999
C3Y645_BRAFL
Uncharacterized protein.
   
 0.999
C3YH75_BRAFL
Uncharacterized protein.
  
 0.999
C3YY41_BRAFL
RNA_pol_L_2 domain-containing protein.
   
 0.999
C3Z918_BRAFL
RPOLD domain-containing protein.
  
 0.999
C3ZLN6_BRAFL
Uncharacterized protein.
   
 0.999
C3ZQF0_BRAFL
Uncharacterized protein.
  
 0.999
C3ZQZ0_BRAFL
Uncharacterized protein.
    
 0.999
C3YDJ1_BRAFL
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.998
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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