STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Y8A8_BRAFLDTW domain-containing protein. (251 aa)    
Predicted Functional Partners:
C3Z3T9_BRAFL
Uncharacterized protein.
      
 0.683
C3YR55_BRAFL
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.
      
 0.570
C3XSF6_BRAFL
RRM domain-containing protein.
      
 0.567
C3ZUA8_BRAFL
DTW domain-containing protein.
      
 0.559
C3Y935_BRAFL
Probable ribosome biogenesis protein BRAFLDRAFT_68128; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.557
C3XTV8_BRAFL
DRBM domain-containing protein.
      
 0.553
C3YIE6_BRAFL
Uncharacterized protein.
      
 0.508
C3YIH5_BRAFL
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
      
 0.507
C3YRN3_BRAFL
Uncharacterized protein.
      
 0.437
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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