STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
C3YBR1_BRAFLLon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (997 aa)    
Predicted Functional Partners:
C3XZT9_BRAFL
GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.
  
  
 0.836
C3YZC2_BRAFL
ATPase_AAA_core domain-containing protein.
  
 
 0.826
C3YCE7_BRAFL
ATP-dependent Clp protease proteolytic subunit.
  
 
 0.757
C3YQ16_BRAFL
Uncharacterized protein.
 
 
 0.750
C3YTK3_BRAFL
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.739
C3YJ03_BRAFL
Uncharacterized protein.
     
 0.738
C3Y246_BRAFL
Uncharacterized protein.
   
 0.684
C3Z8I9_BRAFL
Uncharacterized protein; Belongs to the GroES chaperonin family.
  
  
 0.684
C3XZ88_BRAFL
Uncharacterized protein.
  
  
 0.679
C3Z8J0_BRAFL
Uncharacterized protein; Belongs to the chaperonin (HSP60) family.
  
 0.652
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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