STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3YDM2_BRAFLUncharacterized protein. (768 aa)    
Predicted Functional Partners:
C3ZDP8_BRAFL
Uncharacterized protein.
    
 0.972
C3YBF4_BRAFL
Uncharacterized protein.
    
 0.951
C3ZS00_BRAFL
SMC_N domain-containing protein.
   
 
 0.921
C3YDF6_BRAFL
ANK_REP_REGION domain-containing protein.
   
 0.898
C3YFG1_BRAFL
FHA domain-containing protein.
    
 0.887
C3ZV23_BRAFL
Uncharacterized protein.
    
 0.805
C3ZV25_BRAFL
Uncharacterized protein.
    
 0.805
C3ZH30_BRAFL
Uncharacterized protein.
   
 0.795
C3Y4F4_BRAFL
Uncharacterized protein.
   
 0.785
C3Z2G5_BRAFL
WD_REPEATS_REGION domain-containing protein.
   
 0.768
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.