STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3YQR5_BRAFLVWFA domain-containing protein. (1107 aa)    
Predicted Functional Partners:
C3YYR7_BRAFL
GuKc domain-containing protein.
   
 0.817
C3ZKU8_BRAFL
Ion_trans domain-containing protein.
   
 0.646
C3YFR9_BRAFL
Ion_trans domain-containing protein.
   
 0.630
C3YN75_BRAFL
Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.
   
 0.630
C3YN76_BRAFL
Ion_trans domain-containing protein.
   
 0.630
C3YN77_BRAFL
Ca_chan_IQ domain-containing protein.
   
 0.630
C3Z8U6_BRAFL
Ion_trans domain-containing protein.
   
 0.630
C3ZKU7_BRAFL
Ca_chan_IQ domain-containing protein.
   
 0.630
C3XQR2_BRAFL
Uncharacterized protein.
  
  
 
0.614
C3XQQ4_BRAFL
Uncharacterized protein.
     
 0.579
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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