STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3YTJ8_BRAFLUncharacterized protein. (148 aa)    
Predicted Functional Partners:
C3Z710_BRAFL
RRM domain-containing protein.
   
 0.981
C3YRS5_BRAFL
Uncharacterized protein.
   
 0.970
C3YC15_BRAFL
SAP domain-containing protein.
   
 0.966
C3ZMT4_BRAFL
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
0.965
C3Z469_BRAFL
Uncharacterized protein.
   
 0.952
C3YTJ9_BRAFL
Uncharacterized protein.
 
     0.950
C3ZCD9_BRAFL
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.949
C3Y1Y4_BRAFL
Death domain-containing protein.
   
 0.943
C3YB26_BRAFL
WD_REPEATS_REGION domain-containing protein.
   
 0.879
C3ZFQ9_BRAFL
Uncharacterized protein.
   
 0.867
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.