C3YY11_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3YY11_BRAFL

Uncharacterized protein. (187 aa)

Predicted Functional Partners:

C3Z0U0_BRAFL

0.980

C3XSQ5_BRAFL

0.932

C3Y126_BRAFL

0.932

C3ZBP9_BRAFL

0.925

C3YAE2_BRAFL

0.920

C3ZIS1_BRAFL

0.920

C3XQV4_BRAFL

0.915

C3YJ58_BRAFL

0.915

C3YXK9_BRAFL

0.911

C3XPW2_BRAFL

0.910

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPW2_BRAFL	C3XSQ5_BRAFL	C3XPW2	C3XSQ5	Serine--pyruvate aminotransferase.	SHMT domain-containing protein.	0.696
C3XPW2_BRAFL	C3Y126_BRAFL	C3XPW2	C3Y126	Serine--pyruvate aminotransferase.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.696
C3XPW2_BRAFL	C3YAE2_BRAFL	C3XPW2	C3YAE2	Serine--pyruvate aminotransferase.	Thr_synth_N domain-containing protein.	0.459
C3XPW2_BRAFL	C3YXK9_BRAFL	C3XPW2	C3YXK9	Serine--pyruvate aminotransferase.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.801
C3XPW2_BRAFL	C3YY11_BRAFL	C3XPW2	C3YY11	Serine--pyruvate aminotransferase.	Uncharacterized protein.	0.910
C3XPW2_BRAFL	C3Z0U0_BRAFL	C3XPW2	C3Z0U0	Serine--pyruvate aminotransferase.	Phosphoserine aminotransferase.	0.497
C3XPW2_BRAFL	C3ZBP9_BRAFL	C3XPW2	C3ZBP9	Serine--pyruvate aminotransferase.	Beta_elim_lyase domain-containing protein.	0.925
C3XPW2_BRAFL	C3ZIS1_BRAFL	C3XPW2	C3ZIS1	Serine--pyruvate aminotransferase.	Uncharacterized protein.	0.459
C3XQV4_BRAFL	C3YY11_BRAFL	C3XQV4	C3YY11	PlsC domain-containing protein.	Uncharacterized protein.	0.915
C3XSQ5_BRAFL	C3XPW2_BRAFL	C3XSQ5	C3XPW2	SHMT domain-containing protein.	Serine--pyruvate aminotransferase.	0.696
C3XSQ5_BRAFL	C3YXK9_BRAFL	C3XSQ5	C3YXK9	SHMT domain-containing protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.999
C3XSQ5_BRAFL	C3YY11_BRAFL	C3XSQ5	C3YY11	SHMT domain-containing protein.	Uncharacterized protein.	0.932
C3XSQ5_BRAFL	C3Z0U0_BRAFL	C3XSQ5	C3Z0U0	SHMT domain-containing protein.	Phosphoserine aminotransferase.	0.714
C3XSQ5_BRAFL	C3ZBP9_BRAFL	C3XSQ5	C3ZBP9	SHMT domain-containing protein.	Beta_elim_lyase domain-containing protein.	0.542
C3Y126_BRAFL	C3XPW2_BRAFL	C3Y126	C3XPW2	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Serine--pyruvate aminotransferase.	0.696
C3Y126_BRAFL	C3YXK9_BRAFL	C3Y126	C3YXK9	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.999
C3Y126_BRAFL	C3YY11_BRAFL	C3Y126	C3YY11	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Uncharacterized protein.	0.932
C3Y126_BRAFL	C3Z0U0_BRAFL	C3Y126	C3Z0U0	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Phosphoserine aminotransferase.	0.714
C3Y126_BRAFL	C3ZBP9_BRAFL	C3Y126	C3ZBP9	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Beta_elim_lyase domain-containing protein.	0.952
C3YAE2_BRAFL	C3XPW2_BRAFL	C3YAE2	C3XPW2	Thr_synth_N domain-containing protein.	Serine--pyruvate aminotransferase.	0.459