C3Z044_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3Z044_BRAFL

Uncharacterized protein. (393 aa)

Predicted Functional Partners:

C3YJ03_BRAFL

0.722

C3Z043_BRAFL

0.631

C3XXE6_BRAFL

0.538

C3YGV7_BRAFL

0.537

MTND_BRAFL

0.527

C3Y173_BRAFL

0.524

C3Y174_BRAFL

0.524

C3ZAT5_BRAFL

0.524

C3ZZL9_BRAFL

0.492

C3YXK9_BRAFL

0.478

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XXE6_BRAFL	C3YGV7_BRAFL	C3XXE6	C3YGV7	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.758
C3XXE6_BRAFL	C3Z043_BRAFL	C3XXE6	C3Z043	Uncharacterized protein.	Uncharacterized protein.	0.538
C3XXE6_BRAFL	C3Z044_BRAFL	C3XXE6	C3Z044	Uncharacterized protein.	Uncharacterized protein.	0.538
C3Y173_BRAFL	C3Y174_BRAFL	C3Y173	C3Y174	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Orn_Arg_deC_N domain-containing protein.	0.941
C3Y173_BRAFL	C3YJ03_BRAFL	C3Y173	C3YJ03	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Uncharacterized protein.	0.748
C3Y173_BRAFL	C3YXK9_BRAFL	C3Y173	C3YXK9	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.573
C3Y173_BRAFL	C3Z043_BRAFL	C3Y173	C3Z043	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Uncharacterized protein.	0.524
C3Y173_BRAFL	C3Z044_BRAFL	C3Y173	C3Z044	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Uncharacterized protein.	0.524
C3Y173_BRAFL	C3ZZL9_BRAFL	C3Y173	C3ZZL9	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Aspartate aminotransferase.	0.569
C3Y174_BRAFL	C3Y173_BRAFL	C3Y174	C3Y173	Orn_Arg_deC_N domain-containing protein.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.941
C3Y174_BRAFL	C3YJ03_BRAFL	C3Y174	C3YJ03	Orn_Arg_deC_N domain-containing protein.	Uncharacterized protein.	0.748
C3Y174_BRAFL	C3YXK9_BRAFL	C3Y174	C3YXK9	Orn_Arg_deC_N domain-containing protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.573
C3Y174_BRAFL	C3Z043_BRAFL	C3Y174	C3Z043	Orn_Arg_deC_N domain-containing protein.	Uncharacterized protein.	0.524
C3Y174_BRAFL	C3Z044_BRAFL	C3Y174	C3Z044	Orn_Arg_deC_N domain-containing protein.	Uncharacterized protein.	0.524
C3Y174_BRAFL	C3ZZL9_BRAFL	C3Y174	C3ZZL9	Orn_Arg_deC_N domain-containing protein.	Aspartate aminotransferase.	0.569
C3YGV7_BRAFL	C3XXE6_BRAFL	C3YGV7	C3XXE6	FAD_binding_3 domain-containing protein.	Uncharacterized protein.	0.758
C3YGV7_BRAFL	C3YJ03_BRAFL	C3YGV7	C3YJ03	FAD_binding_3 domain-containing protein.	Uncharacterized protein.	0.545
C3YGV7_BRAFL	C3Z043_BRAFL	C3YGV7	C3Z043	FAD_binding_3 domain-containing protein.	Uncharacterized protein.	0.537
C3YGV7_BRAFL	C3Z044_BRAFL	C3YGV7	C3Z044	FAD_binding_3 domain-containing protein.	Uncharacterized protein.	0.537
C3YJ03_BRAFL	C3Y173_BRAFL	C3YJ03	C3Y173	Uncharacterized protein.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.748