STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Z5L8_BRAFLRibosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (432 aa)    
Predicted Functional Partners:
C3Z8S3_BRAFL
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.999
C3ZBQ5_BRAFL
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.999
C3XZK4_BRAFL
Uncharacterized protein.
   
 0.997
C3YIE6_BRAFL
Uncharacterized protein.
   
 0.997
C3Z7M1_BRAFL
Uncharacterized protein.
   
 0.997
C3XWI6_BRAFL
CP-type G domain-containing protein.
   
 0.996
C3XSF6_BRAFL
RRM domain-containing protein.
   
 
 0.995
C3YBY1_BRAFL
Protein MAK16 homolog; Belongs to the MAK16 family.
   
 0.995
C3YIF7_BRAFL
Brix domain-containing protein.
   
 
 0.995
C3ZL90_BRAFL
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.995
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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