C3Z8E0_BRAFL protein (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C3Z8E0_BRAFL

PCI domain-containing protein. (512 aa)

Predicted Functional Partners:

C3XPP9_BRAFL

0.999

C3XS01_BRAFL

0.999

C3XXY6_BRAFL

0.999

C3XYM1_BRAFL

0.999

C3Y5L7_BRAFL

0.999

C3Y5T5_BRAFL

0.999

C3Y895_BRAFL

0.999

C3Z3L5_BRAFL

0.999

C3Z3L7_BRAFL

0.999

C3Z7L1_BRAFL

0.999

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPP9_BRAFL	C3XS01_BRAFL	C3XPP9	C3XS01	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
C3XPP9_BRAFL	C3XXY6_BRAFL	C3XPP9	C3XXY6	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	MPN domain-containing protein.	0.999
C3XPP9_BRAFL	C3XYM1_BRAFL	C3XPP9	C3XYM1	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
C3XPP9_BRAFL	C3Y5L7_BRAFL	C3XPP9	C3Y5L7	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
C3XPP9_BRAFL	C3Y5T5_BRAFL	C3XPP9	C3Y5T5	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	VWFA domain-containing protein.	0.999
C3XPP9_BRAFL	C3Y895_BRAFL	C3XPP9	C3Y895	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
C3XPP9_BRAFL	C3Z3L5_BRAFL	C3XPP9	C3Z3L5	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
C3XPP9_BRAFL	C3Z3L7_BRAFL	C3XPP9	C3Z3L7	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	PCI domain-containing protein.	0.999
C3XPP9_BRAFL	C3Z7L1_BRAFL	C3XPP9	C3Z7L1	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	PCI domain-containing protein.	0.999
C3XPP9_BRAFL	C3Z8E0_BRAFL	C3XPP9	C3Z8E0	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	PCI domain-containing protein.	0.999
C3XS01_BRAFL	C3XPP9_BRAFL	C3XS01	C3XPP9	AAA domain-containing protein; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.999
C3XS01_BRAFL	C3XXY6_BRAFL	C3XS01	C3XXY6	AAA domain-containing protein; Belongs to the AAA ATPase family.	MPN domain-containing protein.	0.999
C3XS01_BRAFL	C3XYM1_BRAFL	C3XS01	C3XYM1	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
C3XS01_BRAFL	C3Y5L7_BRAFL	C3XS01	C3Y5L7	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
C3XS01_BRAFL	C3Y5T5_BRAFL	C3XS01	C3Y5T5	AAA domain-containing protein; Belongs to the AAA ATPase family.	VWFA domain-containing protein.	0.999
C3XS01_BRAFL	C3Y895_BRAFL	C3XS01	C3Y895	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
C3XS01_BRAFL	C3Z3L5_BRAFL	C3XS01	C3Z3L5	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
C3XS01_BRAFL	C3Z3L7_BRAFL	C3XS01	C3Z3L7	AAA domain-containing protein; Belongs to the AAA ATPase family.	PCI domain-containing protein.	0.999
C3XS01_BRAFL	C3Z7L1_BRAFL	C3XS01	C3Z7L1	AAA domain-containing protein; Belongs to the AAA ATPase family.	PCI domain-containing protein.	0.999
C3XS01_BRAFL	C3Z8E0_BRAFL	C3XS01	C3Z8E0	AAA domain-containing protein; Belongs to the AAA ATPase family.	PCI domain-containing protein.	0.999