STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Z9V8_BRAFLUncharacterized protein. (1301 aa)    
Predicted Functional Partners:
C3ZRF6_BRAFL
Ubiquitin-like domain-containing protein.
   
 0.756
C3YVJ7_BRAFL
E2_bind domain-containing protein.
   
 0.723
C3XTF8_BRAFL
Ubiquitin-like domain-containing protein.
    
 0.701
C3XTG0_BRAFL
Ubiquitin-like domain-containing protein.
    
 0.701
C3YUD7_BRAFL
ULP_PROTEASE domain-containing protein.
    
 0.678
gamt3
Ubiquitin-like domain-containing protein.
    
 0.658
C3Y0H7_BRAFL
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.637
C3Y2C9_BRAFL
Uncharacterized protein.
    
 0.629
C3YZR5_BRAFL
Uncharacterized protein.
    
 0.629
C3Z9S9_BRAFL
Ubiquitin-like domain-containing protein.
    
 0.629
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.