STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZCF0_BRAFLeIF2A domain-containing protein. (548 aa)    
Predicted Functional Partners:
C3Z6N6_BRAFL
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.
   
 
0.941
C3XRZ6_BRAFL
Uncharacterized protein.
   
 
 0.669
C3YG89_BRAFL
Uncharacterized protein.
    
  0.646
C3YX70_BRAFL
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
 
  
 0.588
C3YAU6_BRAFL
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
    
 0.585
C3XUL5_BRAFL
Uncharacterized protein.
    
  0.573
C3YMK6_BRAFL
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.573
C3XWH9_BRAFL
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
  0.569
C3Z5X7_BRAFL
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
   
  0.566
C3ZCV7_BRAFL
Ribosomal_S10 domain-containing protein.
    
  0.566
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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