STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZIE9_BRAFLUncharacterized protein. (431 aa)    
Predicted Functional Partners:
C3YJD6_BRAFL
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.892
C3XZB9_BRAFL
Homeobox domain-containing protein.
    
   0.862
C3Z8P8_BRAFL
RRM domain-containing protein.
   
 0.723
C3YNV4_BRAFL
Uncharacterized protein.
   
 0.676
C3XVM2_BRAFL
Uncharacterized protein.
   
 0.665
C3XVM3_BRAFL
Uncharacterized protein.
   
 0.665
C3XQV0_BRAFL
Small nuclear ribonucleoprotein Sm D3.
   
 0.626
C3Z7M6_BRAFL
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.610
C3ZPT2_BRAFL
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.602
C3Z948_BRAFL
Sm domain-containing protein.
   
 0.594
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.