STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3ZV81_BRAFLCRAL-TRIO domain-containing protein. (1389 aa)    
Predicted Functional Partners:
C3ZV77_BRAFL
Ras-GAP domain-containing protein.
 
     0.951
C3Y0N3_BRAFL
WH1 domain-containing protein.
    
 0.907
C3Z5Z2_BRAFL
HORMA domain-containing protein.
   
 0.800
C3Y0L2_BRAFL
APC1_C domain-containing protein.
    
 0.776
C3XYZ5_BRAFL
Protein kinase domain-containing protein.
   
 0.737
C3XYZ6_BRAFL
BUB1 N-terminal domain-containing protein.
   
 0.737
C3Y3Y6_BRAFL
Uncharacterized protein.
    
 0.731
C3YYK3_BRAFL
TPR_REGION domain-containing protein.
    
 0.717
C3YK31_BRAFL
Uncharacterized protein.
    
 0.702
C3YTV7_BRAFL
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
  0.702
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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