STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3Z0U1_BRAFLElongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family. (1349 aa)    
Predicted Functional Partners:
C3ZI22_BRAFL
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
   
 0.998
C3YQ08_BRAFL
Uncharacterized protein.
   
 0.997
C3YRG7_BRAFL
Uncharacterized protein.
   
 0.993
C3ZDE2_BRAFL
Uncharacterized protein.
   
 0.982
C3YYE8_BRAFL
Uncharacterized protein.
    
 0.869
C3YDP1_BRAFL
Uncharacterized protein.
    
 
 0.840
C3Y0A5_BRAFL
NUC153 domain-containing protein.
   
    0.795
C3Z9P2_BRAFL
Uncharacterized protein.
      
 0.705
C3Z4T9_BRAFL
DNA helicase; Belongs to the MCM family.
   
  
 0.695
C3Z0M5_BRAFL
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
  
 0.657
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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