STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSEBUP00000006171Small nuclear ribonucleoprotein 40 (U5). (348 aa)    
Predicted Functional Partners:
ENSEBUP00000004863
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
    
 0.999
ENSEBUP00000010303
pre-mRNA processing factor 8.
   
 0.999
ENSEBUP00000014021
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.999
ENSEBUP00000017421
annotation not available
    
 0.998
ENSEBUP00000021153
pre-mRNA processing factor 19.
   
0.998
ENSEBUP00000007460
annotation not available
    
  0.997
ENSEBUP00000026535
CDC5 cell division cycle 5-like (S. pombe).
   
  0.997
ENSEBUP00000015945
annotation not available
   
 0.996
ENSEBUP00000024665
BUD31 homolog.
   
 0.996
ENSEBUP00000002850
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.995
Your Current Organism:
Eptatretus burgeri
NCBI taxonomy Id: 7764
Other names: Bdellostoma burgeri, E. burgeri, inshore hagfish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.