STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0030KEGG: bbt:BBta_4385 putative exported protein of unknown function. (178 aa)    
Predicted Functional Partners:
Xaut_0031
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: bja:bll4706 hypothetical protein.
 
     0.946
Xaut_0029
KEGG: bja:bll6187 hypothetical protein.
 
     0.889
Xaut_1011
PFAM: AMP-dependent synthetase and ligase; Thioesterase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; KEGG: sen:SACE_4285 AMP-dependent synthetase and ligase.
  
  
 0.889
Xaut_2785
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: reh:H16_B1685 non-ribosomal peptide synthetase.
  
  
 0.873
Xaut_0024
KEGG: bja:blr6192 hypothetical protein.
 
     0.813
Xaut_1797
KEGG: pde:Pden_2350 hypothetical protein.
 
   
 0.811
Xaut_0028
KEGG: bbt:BBta_5945 putative exported protein of unknown function.
 
     0.807
Xaut_0027
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pde:Pden_0027 40-residue YVTN family beta-propeller repeat protein.
 
     0.786
Xaut_1780
KEGG: bra:BRADO5485 putative cytochrome c protein.
  
   
 0.781
Xaut_1777
PFAM: Sulphur oxidation protein SoxZ; KEGG: rpe:RPE_0849 hypothetical protein.
 
     0.776
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.