STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhEFormate dehydrogenase accessory protein FdhE; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (317 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.953
Xaut_0660
TIGRFAM: formate dehydrogenase, gamma subunit; PFAM: cytochrome B561; KEGG: sme:SMa0007 probable FdoI formate dehydrogenase-O,gamma subunit.
 
  
 0.952
Xaut_0661
TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: sme:SMa0005 probable FdoH formate dehydrogenase-O, beta subunit.
  
 0.952
Xaut_0662
TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sme:SMa0002 probable FdoG formate dehydrogenase-O alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.943
Xaut_0663
PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sme:SMa0002 probable FdoG formate dehydrogenase-O alpha subunit.
 
 
 
 0.912
Xaut_0657
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sme:SMa0013 hypothetical protein.
       0.782
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.781
Xaut_0665
PFAM: transglutaminase domain protein; KEGG: azo:azo0103 conserved hypothetical secreted protein.
 
     0.698
Xaut_1306
PFAM: Fusaric acid resistance protein conserved region; KEGG: bbt:BBta_2071 putative membrane protein of unknown function.
  
     0.584
Xaut_3479
TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpa:RPA0734 NAD-dependent formate dehydrogenase alpha subunit.
  
  
 0.424
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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