STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1308PFAM: protein of unknown function DUF1153; KEGG: rpe:RPE_0964 protein of unknown function DUF1153. (91 aa)    
Predicted Functional Partners:
Xaut_3487
KEGG: rpc:RPC_4248 hypothetical protein.
  
    0.760
Xaut_2527
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: bbr:BB1645 putative anti-sigma factor.
   
    0.741
Xaut_1414
KEGG: bra:BRADO6094 hypothetical protein.
  
     0.728
Xaut_1230
KEGG: bov:BOV_0271 hypothetical protein.
  
     0.710
Xaut_1650
KEGG: rpd:RPD_3249 NifU-like protein.
  
     0.696
Xaut_1484
KEGG: mes:Meso_0436 hypothetical protein.
  
     0.678
Xaut_3850
KEGG: nha:Nham_0406 hypothetical protein.
  
     0.654
Xaut_2816
PFAM: response regulator receiver; KEGG: sme:SMc04044 putative 2-component receiver domain protein.
  
    0.638
Xaut_3485
PFAM: conserved hypothetical protein; KEGG: rpb:RPB_3924 uncharacterised conserved protein UCP033924.
  
     0.635
Xaut_3296
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bra:BRADO0079 putative sensor histidine kinase.
  
     0.592
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.