STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1529KEGG: rle:pRL120671 putative substrate-binding component of ABC transporter. (348 aa)    
Predicted Functional Partners:
Xaut_1530
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3115 ABC transporter related.
 
  
 0.909
Xaut_1531
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0493 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit.
  
 0.904
Xaut_3212
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll6487 ABC transporter permease protein.
 
  
 0.822
Xaut_3211
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO5549 putative ABC-transporter (ATP-binding protein).
 
  
 0.771
Xaut_0977
Putative transmembrane anti-sigma factor; KEGG: bra:BRADO2636 hypothetical protein.
  
    0.649
Xaut_4732
PFAM: beta-lactamase domain protein; KEGG: mgr:MGG_06618 hypothetical protein.
  
     0.507
Xaut_1270
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO0694 putative ABC transporter, ATP-binding protein.
 
  
 0.456
Xaut_3453
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_4890 putative ABC transporter (permease protein).
 
  
 0.451
Xaut_0962
KEGG: rpe:RPE_0477 hypothetical protein.
  
     0.450
Xaut_1528
PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: rpe:RPE_3083 protein of unknown function DUF395, YeeE/YedE.
       0.413
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.