STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1710PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0899 ABC transporter related. (238 aa)    
Predicted Functional Partners:
Xaut_1708
PFAM: inner-membrane translocator; KEGG: vei:Veis_0897 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.968
Xaut_1707
PFAM: inner-membrane translocator; KEGG: vei:Veis_0896 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.954
Xaut_0891
PFAM: inner-membrane translocator; KEGG: rpc:RPC_0678 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.944
Xaut_1047
PFAM: inner-membrane translocator; KEGG: bbr:BB4293 branched-chain amino acid transport system permease.
  
 0.927
Xaut_0643
PFAM: inner-membrane translocator; KEGG: bja:blr3355 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.920
Xaut_1564
PFAM: inner-membrane translocator; KEGG: bov:BOV_A0337 branched-chain amino acid ABC transporter, permease/ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.884
Xaut_1500
PFAM: inner-membrane translocator; KEGG: rpe:RPE_1695 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.883
Xaut_1709
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0898 ABC transporter related.
 
  
0.873
Xaut_0045
PFAM: inner-membrane translocator; KEGG: pth:PTH_2349 branched-chain amino acid ABC-type transport system, permease components.
  
 0.868
Xaut_0006
PFAM: inner-membrane translocator; KEGG: vei:Veis_0897 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.844
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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