STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_1864KEGG: rpb:RPB_1556 branched-chain amino acid ABC transport system substrate-binding protein. (426 aa)    
Predicted Functional Partners:
Xaut_1863
PFAM: inner-membrane translocator; KEGG: mag:amb3591 ABC-type branched-chain amino acid transport system, permease component.
 
 
 0.993
Xaut_1862
PFAM: inner-membrane translocator; KEGG: mag:amb3590 branched-chain amino acid ABC-type transport system, permease components.
 
 
 0.992
Xaut_1860
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_4226 ABC transporter related.
 
  
 0.887
Xaut_1865
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr5967 ABC transporter substrate-binding protein.
 
  
 0.885
Xaut_1861
PFAM: AMP-dependent synthetase and ligase; KEGG: rpe:RPE_4227 AMP-dependent synthetase and ligase.
 
    0.871
Xaut_1866
KEGG: mag:amb3594 coenzyme F390 synthetase.
 
    0.831
Xaut_4216
PFAM: inner-membrane translocator; KEGG: rpb:RPB_1662 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.619
Xaut_1618
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bme:BMEII0874 high-affinity branched-chain amino acid transport system permease protein LivH / high-affinity branched-chain amino acid transport ATP-binding protein LivG.
  
  
 0.532
Xaut_4055
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3708 ABC branched chain amino acid family transporter, fused ATPase and inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.532
Xaut_4062
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: har:HEAR2680 putative high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) (partial match); Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.532
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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